Breakfast Egg Muffins

Featured in: Savory Bites

These delightful breakfast egg muffins offer a convenient and flavorful start to your day. Whisk together eggs, milk, shredded cheddar, diced bell peppers, onions, and crumbled bacon, then bake in a muffin tin until golden and set. They are incredibly versatile, allowing you to swap bacon for sausage or ham, or make them vegetarian with spinach.

These savory handhelds are perfect for meal prepping, can be stored in the refrigerator for days, and even freeze well for later enjoyment. A fantastic gluten-free option, they're simple to prepare and an excellent choice for busy mornings. Serve warm, perhaps with a side of salsa or hot sauce, for an extra zing.

Updated on Sat, 31 Jan 2026 15:29:00 GMT
Golden brown Breakfast Egg Muffins with melted cheddar, bacon, and peppers sit on a white plate, perfect for a quick on-the-go breakfast. Save
Golden brown Breakfast Egg Muffins with melted cheddar, bacon, and peppers sit on a white plate, perfect for a quick on-the-go breakfast. | cravebop.com

The morning my teenage son started basketball practice changed everything about our breakfast routine. Suddenly we needed something protein-packed that could survive a car ride and still taste amazing. These egg muffins became my secret weapon—warm, portable, and somehow even better after a night in the fridge. I've since made them for baby showers, office breakfasts, and lazy Sunday meal prep sessions.

Last Christmas morning, my sister walked into my kitchen and immediately asked what smelled so incredible. The bacon and cheese had been baking into these fluffy muffins while we opened presents. Everyone ended up eating breakfast standing around the island, reaching for seconds between gift exchanges. Now theyre requested at every family gathering, birthday or not.

Ingredients

  • 6 large eggs: Room temperature eggs whisk up fluffier and incorporate better with the milk for a lighter texture
  • 1/2 cup milk: Whole milk creates the richest muffins but any variety works in a pinch
  • 1/2 cup shredded cheddar cheese: Sharp cheddar gives you the biggest flavor punch but mild is perfect for kids
  • 1/2 cup diced bell peppers: Mix colors for the prettiest result or stick to one variety based on what you have
  • 1/2 cup diced onions: Red onions add mild sweetness while white onions bring a sharper bite
  • 1/2 cup cooked and crumbled bacon: Cook extra bacon on Sunday and crumble what you need throughout the week
  • 1/2 teaspoon salt: Adjust based on whether your bacon or cheese is particularly salty
  • 1/4 teaspoon black pepper: Freshly cracked pepper makes a noticeable difference in flavor depth
  • 1/4 teaspoon garlic powder: This subtle background flavor makes people ask what your secret ingredient is
  • 1/4 teaspoon paprika: Smoked paprika adds a wonderful depth that regular paprika cannot match
  • Cooking spray or olive oil: Thorough greasing is nonnegotiable or these will stick stubbornly

Instructions

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Get your oven ready:
Preheat to 350°F and generously grease every single cup of your muffin tin including the top surface
Whisk the base:
Beat eggs and milk until slightly frothy about 30 seconds of energetic whisking does the trick
Add everything else:
Dump in your cheese vegetables bacon and seasonings then stir until every spoonful looks evenly distributed
Fill the muffin cups:
Pour mixture about two thirds full giving each muffin room to rise without overflowing
Bake until golden:
Cook for 18 to 20 minutes until the centers are set and the tops are lightly browned
Cool and remove:
Let them rest for 5 minutes then run a knife around the edges to pop them out cleanly
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Slice meats, cheeses, and bread evenly for sandwiches, charcuterie boards, and precise meal prep.
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Freshly baked Breakfast Egg Muffins with visible bell peppers and cheddar cheese, great for meal prep on a busy weekday morning. Save
Freshly baked Breakfast Egg Muffins with visible bell peppers and cheddar cheese, great for meal prep on a busy weekday morning. | cravebop.com

My neighbor Sarah now texts me every Sunday asking if I'm making a batch. Her husband takes two to work daily and swears they kept him from buying breakfast during busy season at the office. There is something deeply satisfying about handing someone a homemade breakfast that feels like a luxury but took almost no effort.

Make Ahead Magic

These muffins were practically designed for meal prep. Bake them on Sunday portion into containers and you have breakfast sorted for the entire week. They actually develop more flavor overnight as the ingredients meld together in the fridge.

Freezing Instructions

Flash freeze the cooled muffins on a baking sheet before transferring to a freezer bag. This prevents them from sticking together into one solid block. They will keep perfectly for three months and reheat beautifully in the microwave.

Serving Suggestions

Some mornings I serve these with fresh fruit and yogurt parfaits for a complete breakfast spread. Other times they become the protein in a breakfast sandwich with an English muffin. They are also surprisingly good crumbled over a salad for lunch.

  • Keep hot sauce on the table for those who like extra heat
  • Pair with sliced avocado for creaminess
  • Serve alongside fresh salsa for a Mexican inspired breakfast
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Savory Breakfast Egg Muffins featuring crumbled bacon and onions, served warm alongside a cup of coffee for a hearty breakfast. Save
Savory Breakfast Egg Muffins featuring crumbled bacon and onions, served warm alongside a cup of coffee for a hearty breakfast. | cravebop.com

There is nothing quite like pulling a warm egg muffin from the fridge on a frantic Tuesday morning. Somehow a homemade breakfast makes the whole day feel more manageable.

Recipe Guide

Can these be made ahead of time?

Absolutely! These muffins are designed for meal prep. You can bake them, cool completely, and store them in an airtight container in the refrigerator for up to 5 days. Reheat gently in the microwave before serving.

What are some substitution ideas for the bacon?

Feel free to customize! You can swap the bacon for cooked and crumbled sausage or diced ham. For a vegetarian option, simply omit the meat and consider adding sautéed spinach, mushrooms, or extra bell peppers.

How should I store leftover egg muffins?

Once fully cooled, place the muffins in an airtight container. They will keep well in the refrigerator for up to 5 days. For longer storage, they can also be frozen.

Can I freeze these egg muffins?

Yes, they freeze beautifully! After baking and cooling completely, place the muffins in a freezer-safe bag or container. Thaw them overnight in the refrigerator and reheat in the microwave or oven until warmed through.

What can I serve with these muffins?

These savory handhelds are great on their own, but also pair wonderfully with a side of salsa, hot sauce, or a dollop of sour cream. A fresh fruit salad or a slice of avocado would also complement them nicely.

Are these egg muffins gluten-free?

As written, this is a gluten-free dish. Always be sure to check the labels of any processed ingredients, such as bacon or sausage, to ensure they don't contain hidden gluten.

Breakfast Egg Muffins

Golden, fluffy egg muffins featuring melted cheddar, crisp bacon, and bell peppers. Ideal for grab-and-go mornings or meal prep.

Prep duration
10 min
Cook duration
20 min
Complete duration
30 min
Created by Lindsey Carter

Style Savory Bites

Skill level Easy

Heritage American

Output 4 Portions

Nutrition labels No gluten, Carb-conscious

What you'll need

Eggs & Dairy

01 6 large eggs
02 1/2 cup milk
03 1/2 cup shredded cheddar cheese

Vegetables

01 1/2 cup diced bell peppers (red, green, or yellow)
02 1/2 cup diced onions

Proteins

01 1/2 cup cooked and crumbled bacon (or sausage)

Seasonings

01 1/2 teaspoon salt
02 1/4 teaspoon black pepper
03 1/4 teaspoon garlic powder
04 1/4 teaspoon paprika

For Greasing

01 Cooking spray or olive oil (for muffin tin)

Method

Phase 01

Preheat Oven: Preheat oven to 350°F (175°C).

Phase 02

Prepare Muffin Tin: Grease a standard 12-cup muffin tin with cooking spray or olive oil.

Phase 03

Whisk Egg Mixture: In a large bowl, whisk together eggs and milk until well combined and slightly frothy.

Phase 04

Combine Ingredients: Stir in cheddar cheese, bell peppers, onions, bacon (or sausage), salt, black pepper, garlic powder, and paprika until evenly mixed.

Phase 05

Fill Muffin Cups: Pour the mixture into the prepared muffin tin, filling each cup about 2/3 full.

Phase 06

Bake Muffins: Bake for 18-20 minutes, or until muffins are set and lightly golden. A toothpick inserted in the center should come out clean.

Phase 07

Cool and Remove: Remove from oven and let cool for 5 minutes. Carefully loosen muffins with a knife if needed and remove from tin.

Phase 08

Serve and Store: Serve warm, or cool completely and store in an airtight container in the refrigerator for up to 5 days. Reheat in the microwave before serving.

Tools needed

  • Muffin tin (12-cup)
  • Mixing bowl
  • Whisk
  • Measuring cups and spoons
  • Knife and cutting board

Allergy alerts

Always review ingredients for potential allergens and seek professional medical advice if uncertain.
  • Contains: Eggs, Milk/Dairy
  • May contain: Pork (bacon/sausage), depending on protein choice
  • Gluten-free as written, but always check labels on sausage or other add-ins

Nutrition breakdown (per portion)

Values shown are estimates only - consult healthcare providers for specific advice.
  • Energy: 150
  • Fats: 10 g
  • Carbohydrates: 2 g
  • Proteins: 11 g